TranscriptDB Phylogenies Tool
A progressive supertree construction algorithm that relies on a dynamic programming approach to infer a transcript phylogeny based on precomputed clusters of orthologous transcripts.
If you are using our tool, please cite our recent paper
Ouedraogo WY, Ouangraoua A. Inferring Transcript Phylogenies from Transcript Ortholog Clusters. InRECOMB International Workshop on Comparative Genomics 2024 Apr 15 (pp. 47-68). Cham: Springer Nature Switzerland.

Clusters


Matrix


gene tree input(NHX)


mappings input (transcripts to gene)


algorithm (labelled version or not)



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