Transcript Database Browser

Examples :
Entry Ensembl Transcript ID : ENSDCDT00000063049 or Entry Gene Name : TAF6 or Taxon Name : Saccharomyces_cerevisiae
Entry Ensembl Gene ID : ENSDCDG00000002969 or Entry Ensembl Gene Tree ID : ENSGT00990000204364 or Entry Transcript family ID : TDBTT00990000204364|.2 or Common species Name : Saccharomyces cerevisiae

Which species are included in TDB?

The species and the common names are displayed as they are stored in TranscriptDB. Users can use this information for specific queries.

TDB tools

TDB Transcript Clustering

Graph-clustering Algorithm to infer clusters of isoorthologous transcripts using gene-level homology relationships and a Reciprocal Best Hits approach

TDB Transcript Phylogenies

A progressive supertree construction algorithm that relies on a dynamic programming approach to infer a transcript phylogeny based on precomputed clusters of orthologous transcripts.

Newest

new

(April 2024) - Major update. TranscriptDB now uses the version 111 (v111) of Ensembl

past

(August 2020) - Major update. TranscriptDB uses the version 98 of Ensembl